DNA Damage Atlas



Basic Information

Dataset ID:

  GSE126822


PMID:

  32956035


Technique Type:

  U-DNA-seq


Publication:

  Genome-wide alterations of uracil distribution patterns in human DNA upon chemotherapeutic treatments


First Author:

  Hajnalka L Pálinkás


Last Author:

  Beáta G Vértessy


Year:

  2020


Journal:

  eLife


Access Link:   

Samples ( 32 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM4144340-5FdUR_UGI_HCT116_rep1_IPHCT116Homo sapiens5-FUdRtransgene: UGI///U-DNA-seq
GSM4144341-5FdUR_UGI_HCT116_rep1_sonHCT116Homo sapiens5-FUdRtransgene: UGI///U-DNA-seq
GSM4144342-5FdUR_UGI_HCT116_rep2_IPHCT116Homo sapiens5-FUdRtransgene: UGI///U-DNA-seq
GSM4144343-5FdUR_UGI_HCT116_rep2_sonHCT116Homo sapiens5-FUdRtransgene: UGI///U-DNA-seq
GSM4144344-RTX_UGI_HCT116_rep1_IPHCT116Homo sapiensRaltitrexedtransgene: UGI///U-DNA-seq
GSM4144345-RTX_UGI_HCT116_rep1_sonHCT116Homo sapiensRaltitrexedtransgene: UGI///U-DNA-seq
GSM4144346-RTX_UGI_HCT116_rep2_IPHCT116Homo sapiensRaltitrexedtransgene: UGI///U-DNA-seq
GSM4144347-RTX_UGI_HCT116_rep2_sonHCT116Homo sapiensRaltitrexedtransgene: UGI///U-DNA-seq
GSM4144348-NT_UGI_HCT116_rep1_IPHCT116Homo sapiensNTtransgene: UGI///U-DNA-seq
GSM4144349-NT_UGI_HCT116_rep1_sonHCT116Homo sapiensNTtransgene: UGI///U-DNA-seq
GSM4144350-NT_UGI_HCT116_rep2_IPHCT116Homo sapiensNTtransgene: UGI///U-DNA-seq
GSM4144351-NT_UGI_HCT116_rep2_sonHCT116Homo sapiensNTtransgene: UGI///U-DNA-seq
GSM4144352-WT_HCT116_rep1_IPHCT116Homo sapiensNTtransgene: no transgene///U-DNA-seq
GSM4144353-WT_HCT116_rep1_sonHCT116Homo sapiensNTtransgene: no transgene///U-DNA-seq
GSM4144354-WT_HCT116_rep2_IPHCT116Homo sapiensNTtransgene: no transgene///U-DNA-seq
GSM4144355-WT_HCT116_rep2_sonHCT116Homo sapiensNTtransgene: no transgene///U-DNA-seq
GSM4144356-WT_K562_rep1_IPK562Homo sapiensNTtransgene: no transgene///U-DNA-seq
GSM4144357-WT_K562_rep1_sonK562Homo sapiensNTtransgene: no transgene///U-DNA-seq
GSM4644419-5FdUR_UGI_HCT116MMR_rep1_IPHCT116Homo sapiens5-FUdRMMR proficient; transgene: UGI///U-DNA-seq
GSM4644420-5FdUR_UGI_HCT116MMR_rep1_sonHCT116Homo sapiens5-FUdRMMR proficient; transgene: UGI///U-DNA-seq
GSM4644421-5FdUR_UGI_HCT116MMR_rep2_IPHCT116Homo sapiens5-FUdRMMR proficient; transgene: UGI///U-DNA-seq
GSM4644422-5FdUR_UGI_HCT116MMR_rep2_sonHCT116Homo sapiens5-FUdRMMR proficient; transgene: UGI///U-DNA-seq
GSM4644423-RTX_UGI_HCT116MMR_rep1_IPHCT116Homo sapiensRaltitrexedMMR proficient; transgene: UGI///U-DNA-seq
GSM4644424-RTX_UGI_HCT116MMR_rep1_sonHCT116Homo sapiensRaltitrexedMMR proficient; transgene: UGI///U-DNA-seq
GSM4644425-RTX_UGI_HCT116MMR_rep2_IPHCT116Homo sapiensRaltitrexedMMR proficient; transgene: UGI///U-DNA-seq
GSM4644426-RTX_UGI_HCT116MMR_rep2_sonHCT116Homo sapiensRaltitrexedMMR proficient; transgene: UGI///U-DNA-seq
GSM4644427-NT_UGI_HCT116MMR_rep1_IPHCT116Homo sapiensNTMMR proficient; transgene: UGI///U-DNA-seq
GSM4644428-NT_UGI_HCT116MMR_rep1_sonHCT116Homo sapiensNTMMR proficient; transgene: UGI///U-DNA-seq
GSM4644429-NT_UGI_HCT116MMR_rep2_IPHCT116Homo sapiensNTMMR proficient; transgene: UGI///U-DNA-seq
GSM4644430-NT_UGI_HCT116MMR_rep2_sonHCT116Homo sapiensNTMMR proficient; transgene: UGI///U-DNA-seq
GSM4644431-NT_UGI_HCT116_rep2_ctrHCT116Homo sapiensNTtransgene: UGI///U-DNA-seq
GSM4644432-5FdUR_UGI_HCT116_rep2_ctrHCT116Homo sapiens5-FUdRtransgene: UGI///U-DNA-seq


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