 |
DNA Damage Atlas |
|
|
DNA Damage Atlas |
Basic Information
Dataset ID:
GSE99011
PMID:
29785056
Technique Type:
dU-seq
Publication:
Genome-wide mapping reveals that deoxyuridine is enriched in the human centromeric DNA
First Author:
Xiaoting Shu
Last Author:
Chengqi Yi
Year:
2018
Journal:
Nature Chemical Biology
Access Link:
Samples ( 54 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM2630035-K562_input_1 | K562 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630036-K562_input_2 | K562 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630037-K562_control_1 | K562 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630038-K562_control_2 | K562 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630039-K562_PD_1 | K562 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630040-K562_PD_2 | K562 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630041-WPMY-1_input_1 | WPMY-1 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630042-WPMY-1_input_2 | WPMY-1 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630043-WPMY-1_control_1 | WPMY-1 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630044-WPMY-1_control_2 | WPMY-1 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630045-WPMY-1_PD_1 | WPMY-1 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630046-WPMY-1_PD_2 | WPMY-1 | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630047-HEK293T_input_1 | 293T | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630048-HEK293T_input_2 | 293T | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630049-HEK293T_control_1 | 293T | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630050-HEK293T_control_2 | 293T | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630051-HEK293T_PD_1 | 293T | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630052-HEK293T_PD_2 | 293T | Homo sapiens | / | WT | / | / | / | dU-seq | |
| GSM2630053-UNGKO_input_1 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630054-UNGKO_input_2 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630055-UNGKO_input_3 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630056-UNGKO_input_4 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630057-UNGKO_control_1 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630058-UNGKO_control_2 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630059-UNGKO_control_3 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630060-UNGKO_control_4 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630061-UNGKO_PD_1 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630062-UNGKO_PD_2 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630063-UNGKO_PD_3 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2630064-UNGKO_PD_4 | 293T | Homo sapiens | / | UNG-/- | / | / | / | dU-seq | |
| GSM2769587-biotin-dCTP_K562_input_1 | K562 | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769588-biotin-dCTP_K562_input_2 | K562 | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769589-biotin-dCTP_K562_control_1 | K562 | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769590-biotin-dCTP_K562_control_2 | K562 | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769591-biotin-dCTP_K562_PD_1 | K562 | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769592-biotin-dCTP_K562_PD_2 | K562 | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769593-biotin-dCTP_HEK293T_input_1 | 293T | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769594-biotin-dCTP_HEK293T_input_2 | 293T | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769595-biotin-dCTP_HEK293T_control_1 | 293T | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769596-biotin-dCTP_HEK293T_control_2 | 293T | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769597-biotin-dCTP_HEK293T_PD_1 | 293T | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769598-biotin-dCTP_HEK293T_PD_2 | 293T | Homo sapiens | biotin-dCTP (other: biotin-dUTP) | WT | / | / | / | dU-seq | |
| GSM2769599-5F_HEK293T_input_1 | 293T | Homo sapiens | 5-fluorodeoxyuridine | WT | / | / | / | dU-seq | |
| GSM2769600-5F_HEK293T_input_2 | 293T | Homo sapiens | 5-fluorodeoxyuridine | WT | / | / | / | dU-seq | |
| GSM2769601-5F_HEK293T_control_1 | 293T | Homo sapiens | 5-fluorodeoxyuridine | WT | / | / | / | dU-seq | |
| GSM2769602-5F_HEK293T_control_2 | 293T | Homo sapiens | 5-fluorodeoxyuridine | WT | / | / | / | dU-seq | |
| GSM2769603-5F_HEK293T_PD_1 | 293T | Homo sapiens | 5-fluorodeoxyuridine | WT | / | / | / | dU-seq | |
| GSM2769604-5F_HEK293T_PD_2 | 293T | Homo sapiens | 5-fluorodeoxyuridine | WT | / | / | / | dU-seq | |
| GSM2769605-5F_UNGKO_input_1 | 293T | Homo sapiens | 5-fluorodeoxyuridine | UNG-/- | / | / | / | dU-seq | |
| GSM2769606-5F_UNGKO_input_2 | 293T | Homo sapiens | 5-fluorodeoxyuridine | UNG-/- | / | / | / | dU-seq | |
| GSM2769607-5F_UNGKO_control_1 | 293T | Homo sapiens | 5-fluorodeoxyuridine | UNG-/- | / | / | / | dU-seq | |
| GSM2769608-5F_UNGKO_control_2 | 293T | Homo sapiens | 5-fluorodeoxyuridine | UNG-/- | / | / | / | dU-seq | |
| GSM2769609-5F_UNGKO_PD_1 | 293T | Homo sapiens | 5-fluorodeoxyuridine | UNG-/- | / | / | / | dU-seq | |
| GSM2769610-5F_UNGKO_PD_2 | 293T | Homo sapiens | 5-fluorodeoxyuridine | UNG-/- | / | / | / | dU-seq |
Copyright © 2023 All Rights Reserved by Wu lab