DNA Damage Atlas



Basic Information

Dataset ID:

  GSE181669


PMID:

  34503990


Technique Type:

  END-seq


Publication:

  Role of 53BP1 in end protection and DNA synthesis at DNA breaks


First Author:

  Jacob Paiano


Last Author:

  André Nussenzweig


Year:

  2021


Journal:

  Genes & Development


Access Link:   

Samples ( 49 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM5508993-PreB-WT-18hrs-AsisI-ENDseqAbel pre-B cellMus musculusNTWTExo VII + Exo TG1AsisI (18hrs)END-seq
GSM5508994-PreB-Lig4-18hrs-AsisI-ENDseqAbel pre-B cellMus musculusNTLig4-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5508995-PreB-Lig4-12hrs-AsiSI-ENDseq-control-for-APH-POLAiAbel pre-B cellMus musculusNTLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5508996-PreB-Lig4-12hrs-AsiSI-ENDseq-APHAbel pre-B cellMus musculusAphidicolinLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5508997-PreB-Lig4-12hrs-AsiSI-ENDseq-POLAiAbel pre-B cellMus musculusPOLA inhibitorLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5508998-PreB-Lig4-12hrs-AsiSI-ENDseq-control-for-APH-POLAi-rep2Abel pre-B cellMus musculusNTLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5508999-PreB-Lig4-12hrs-AsiSI-ENDseq-APH-rep2Abel pre-B cellMus musculusAphidicolinLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509000-PreB-Lig4-12hrs-AsiSI-ENDseq-POLAi-rep2Abel pre-B cellMus musculusPOLA inhibitorLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509001-PreB-Lig4-18hrs-AsisI-ENDseq-HUAbel pre-B cellMus musculusHydroxyureaLig4-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509002-PreB-Lig4-18hrs-AsisI-ENDseq-control-for-HUAbel pre-B cellMus musculusNTLig4-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509003-PreB-Lig4-18hrs-AsisI-ENDseq-DMSOAbel pre-B cellMus musculusDMSOLig4-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509004-PreB-Lig4-18hrs-AsisI-ENDseq-50uM-APHAbel pre-B cellMus musculusAphidicolinLig4-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509005-PreB-Lig4-18hrs-AsisI-ENDseq-5uM-APHAbel pre-B cellMus musculusAphidicolinLig4-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509006-PreB-Lig4-12hrs-AsisI-ENDseq-second-POLAiAbel pre-B cellMus musculusPOLA inhibitorLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509007-PreB-Lig4-12hrs-AsisI-ENDseq-control-for-second-POLAiAbel pre-B cellMus musculusNTLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509008-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone1Abel pre-B cellMus musculusNTLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509009-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone1-APHAbel pre-B cellMus musculusAphidicolinLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509010-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone1-contrl-for-APH-POLAiAbel pre-B cellMus musculusNTLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509011-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone1-POLAiAbel pre-B cellMus musculusPOLA inhibitorLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509012-PreB-Lig4-18hrs-AsisI-ENDseq-compareWith-Lig4-53BP1-clone2Abel pre-B cellMus musculusNTLig4-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509013-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone2-contrl-for-APH-POLAiAbel pre-B cellMus musculusNTLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509014-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone2-APHAbel pre-B cellMus musculusAphidicolinLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509015-PreB-Lig4-53BP1-18hrs-AsisI-ENDseq-clone2-POLAiAbel pre-B cellMus musculusPOLA inhibitorLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509016-PreB-Lig4-G2-6hrs-AsisI-ENDseqAbel pre-B cellMus musculusNTLig4-/-Exo VII + Exo TG2AsisI (6hrs)END-seq
GSM5509017-PreB-Lig4-G2-6hrs-AsisI-ENDseq-APHAbel pre-B cellMus musculusAphidicolinLig4-/-Exo VII + Exo TG2AsisI (6hrs)END-seq
GSM5509018-PreB-Lig4-asyn-6hrs-AsisI-ENDseqAbel pre-B cellMus musculusNTLig4-/-Exo VII + Exo T/AsisI (6hrs)END-seq
GSM5509019-PreB-Lig4-asyn-6hrs-AsisI-ENDseq-APHAbel pre-B cellMus musculusAphidicolinLig4-/-Exo VII + Exo T/AsisI (6hrs)END-seq
GSM5509020-PreB-WT-G2-6hrs-AsisI-ENDseqAbel pre-B cellMus musculusNTWTExo VII + Exo TG2AsisI (6hrs)END-seq
GSM5509021-PreB-WT-G2-6hrs-AsisI-ENDseq-APHAbel pre-B cellMus musculusAphidicolinWTExo VII + Exo TG2AsisI (6hrs)END-seq
GSM5509022-PreB-WT-asyn-6hrs-AsisI-ENDseqAbel pre-B cellMus musculusNTWTExo VII + Exo T/AsisI (6hrs)END-seq
GSM5509023-PreB-WT-asyn-6hrs-AsisI-ENDseq-APHAbel pre-B cellMus musculusAphidicolinWTExo VII + Exo T/AsisI (6hrs)END-seq
GSM5509024-PreB-Lig4-12hrs-AsisI-ENDseq-control-for-DNA2i-EXO1iAbel pre-B cellMus musculusNTLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509025-PreB-Lig4-12hrs-AsisI-ENDseq-DNA2iAbel pre-B cellMus musculusDNA2 inhibitorLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509026-PreB-Lig4-12hrs-AsisI-ENDseq-EXO1iAbel pre-B cellMus musculusEXO1 inhibitorLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509027-PreB-Lig4-12hrs-AsisI-ENDseq-DNA2i-EXO1iAbel pre-B cellMus musculusDNA2 inhibitor + EXO1 inhibitorLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509028-PreB-Lig4-53BP1-12hrs-AsisI-ENDseq-control-for-DNA2i-EXO1iAbel pre-B cellMus musculusNTLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509029-PreB-Lig4-53BP1-12hrs-AsisI-ENDseq-DNA2iAbel pre-B cellMus musculusDNA2 inhibitorLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509030-PreB-Lig4-53BP1-12hrs-AsisI-ENDseq-EXO1iAbel pre-B cellMus musculusEXO1 inhibitorLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509031-PreB-Lig4-53BP1-12hrs-AsisI-ENDseq-DNA2i-EXO1iAbel pre-B cellMus musculusDNA2 inhibitor + EXO1 inhibitorLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509032-PreB-Lig4-12hrs-AsisI-ENDseq-control-for-DNA2i-EXO1i-rep2Abel pre-B cellMus musculusNTLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509033-PreB-Lig4-12hrs-AsisI-ENDseq-DNA2i-rep2Abel pre-B cellMus musculusDNA2 inhibitorLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509034-PreB-Lig4-12hrs-AsisI-ENDseq-EXO1i-rep2Abel pre-B cellMus musculusEXO1 inhibitorLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509035-PreB-Lig4-12hrs-AsisI-ENDseq-DNA2i-EXO1i-rep2Abel pre-B cellMus musculusDNA2 inhibitor + EXO1 inhibitorLig4-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509036-PreB-Lig4-53BP1-12hrs-AsisI-ENDseq-control-for-DNA2i-EXO1i-rep2Abel pre-B cellMus musculusNTLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509037-PreB-Lig4-53BP1-12hrs-AsisI-ENDseq-DNA2i-rep2Abel pre-B cellMus musculusDNA2 inhibitorLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509038-PreB-Lig4-53BP1-12hrs-AsisI-ENDseq-EXO1i-rep2Abel pre-B cellMus musculusEXO1 inhibitorLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509039-PreB-Lig4-53BP1-12hrs-AsisI-ENDseq-DNA2i-EXO1i-rep2Abel pre-B cellMus musculusDNA2 inhibitor + EXO1 inhibitorLig4-/-53BP1-/-Exo VII + Exo TG1AsisI (12hrs)END-seq
GSM5509040-PreB-Lig4-Rev7-18hrs-AsisI-ENDseqAbel pre-B cellMus musculusNTLig4-/-Rev7-/-Exo VII + Exo TG1AsisI (18hrs)END-seq
GSM5509041-PreB-Lig4-Rev7-18hrs-AsisI-ENDseq-rep2Abel pre-B cellMus musculusNTLig4-/-Rev7-/-Exo VII + Exo TG1AsisI (18hrs)END-seq


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