DNA Damage Atlas



Basic Information

Dataset ID:

  GSE167257


PMID:

  33767446


Technique Type:

  SAR-seq


Publication:

  Neuronal enhancers are hotspots for DNA single-strand break repair


First Author:

  Wei Wu


Last Author:

  André Nussenzweig


Year:

  2021


Journal:

  Nature


Access Link:   

Samples ( 67 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM5100400-SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensNTWT///SAR-seq
GSM5100401-SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensNTWT///SAR-seq
GSM5100402-SAR-seq_in_iNeuron_rep3iNeuronHomo sapiensNTWT///SAR-seq
GSM5100403-input_for_SAR-seq_in_iNeuroniNeuronHomo sapiensNTWT///SAR-seq
GSM5100404-HU_SAR-seq_in_iNeuroniNeuronHomo sapiensHydroxyureaWT///SAR-seq
GSM5100405-NT_SAR-seq_for_HU_in_iNeuroniNeuronHomo sapiensNTWT///SAR-seq
GSM5100406-POLAi_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensPOLA inhibitorWT///SAR-seq
GSM5100407-POLAi_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensPOLA inhibitorWT///SAR-seq
GSM5100408-NT_SAR-seq_for_POLAi_in_iNeuroniNeuronHomo sapiensNTWT///SAR-seq
GSM5100409-PARPi_Olaparib_SAR-seq_in_iNeuroniNeuronHomo sapiensOlaparibWT///SAR-seq
GSM5100410-PARPi_Talazoparib_SAR-seq_in_iNeuroniNeuronHomo sapiensTalazoparibWT///SAR-seq
GSM5100411-PARPi_Veliparib_SAR-seq_in_iNeuroniNeuronHomo sapiensVeliparibWT///SAR-seq
GSM5100412-NT_SAR-seq_for_PARPi_in_iNeuroniNeuronHomo sapiensNTWT///SAR-seq
GSM5100413-sgPARP1_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensNTsgPARP1///SAR-seq
GSM5100414-sgPARP1_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensNTsgPARP1///SAR-seq
GSM5100415-sgControl_SAR-seq_for_sgPARP1_in_iNeuron_rep1iNeuronHomo sapiensNTsgControl///SAR-seq
GSM5100416-sgXRCC1_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensNTsgXRCC1///SAR-seq
GSM5100417-sgXRCC1_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensNTsgXRCC1///SAR-seq
GSM5100418-sgControl_SAR-seq_for_sgXRCC1_in_iNeuron_rep1iNeuronHomo sapiensNTsgControl///SAR-seq
GSM5100419-sgControl_SAR-seq_for_sgXRCC1_in_iNeuron_rep2iNeuronHomo sapiensNTsgControl///SAR-seq
GSM5100420-POLB_sg1_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensNTsgPOLB///SAR-seq
GSM5100421-POLB_sg1_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensNTsgPOLB///SAR-seq
GSM5100422-POLB_sg2_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensNTsgPOLB///SAR-seq
GSM5100423-POLB_sg2_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensNTsgPOLB///SAR-seq
GSM5100424-sgControl_SAR-seq_for_sgPOLB_in_iNeuron_rep1iNeuronHomo sapiensNTsgControl///SAR-seq
GSM5100425-sgControl_SAR-seq_for_sgPOLB_in_iNeuron_rep2iNeuronHomo sapiensNTsgControl///SAR-seq
GSM5100426-NT_sgPOLB_SAR-seq_iNeuron_rep1iNeuronHomo sapiensNTsgPOLB///SAR-seq
GSM5100427-NT_sgPOLB_SAR-seq_iNeuron_rep2iNeuronHomo sapiensNTsgPOLB///SAR-seq
GSM5100428-APH_sgPOLB_SAR-seq_iNeuron_rep1iNeuronHomo sapiensAphidicolinsgPOLB///SAR-seq
GSM5100429-APH_sgPOLB_SAR-seq_iNeuron_rep2iNeuronHomo sapiensAphidicolinsgPOLB///SAR-seq
GSM5100430-NT_sgControl_for_sgPOLB_and_sgPNKP_SAR-seq_iNeuron_rep1iNeuronHomo sapiensNTsgControl///SAR-seq
GSM5100431-NT_sgControl_for_sgPOLB_and_sgPNKP_SAR-seq_iNeuron_rep2iNeuronHomo sapiensNTsgControl///SAR-seq
GSM5100432-APH_sgControl_for_sgPOLB_SAR-seq_iNeuron_rep1iNeuronHomo sapiensAphidicolinsgControl///SAR-seq
GSM5100433-APH_sgControl_for_sgPOLB_SAR-seq_iNeuron_rep2iNeuronHomo sapiensAphidicolinsgControl///SAR-seq
GSM5100434-ETO_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensEtoposideWT///SAR-seq
GSM5100435-ETO_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensEtoposideWT///SAR-seq
GSM5100436-NT_for_ETO_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensNTWT///SAR-seq
GSM5100437-NT_for_ETO_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensNTWT///SAR-seq
GSM5100438-NT_sgPNKP_SAR-seq_iNeuron_rep1iNeuronHomo sapiensNTsgPNKP///SAR-seq
GSM5100439-NT_sgPNKP_SAR-seq_iNeuron_rep2iNeuronHomo sapiensNTsgPNKP///SAR-seq
GSM5100440-CPT_sgPNKP_SAR-seq_iNeuron_rep1iNeuronHomo sapiensCamptothecinsgPNKP///SAR-seq
GSM5100441-CPT_sgPNKP_SAR-seq_iNeuron_rep2iNeuronHomo sapiensCamptothecinsgPNKP///SAR-seq
GSM5100442-CPT_sgControl_for_sgPNKP_SAR-seq_iNeuron_rep1iNeuronHomo sapiensCamptothecinsgControl///SAR-seq
GSM5100443-CPT_sgControl_for_sgPNKP_SAR-seq_iNeuron_rep2iNeuronHomo sapiensCamptothecinsgControl///SAR-seq
GSM5100444-strandness_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensNTWT///SAR-seq
GSM5100445-strandness_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensNTWT///SAR-seq
GSM5100446-strandness_SAR-seq_in_iNeuron_rep3iNeuronHomo sapiensNTWT///SAR-seq
GSM5100447-SAR-seq_in_Muscle_rep1iMuscleHomo sapiensNTWT///SAR-seq
GSM5100448-SAR-seq_in_Muscle_rep2iMuscleHomo sapiensNTWT///SAR-seq
GSM5100449-1hr_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiens1hr EdUWT///SAR-seq
GSM5100450-1hr_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiens1hr EdUWT///SAR-seq
GSM5100451-2hrs_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiens2hrs EdUWT///SAR-seq
GSM5100452-2hrs_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiens2hrs EdUWT///SAR-seq
GSM5100453-4hrs_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiens4hrs EdUWT///SAR-seq
GSM5100454-4hrs_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiens4hrs EdUWT///SAR-seq
GSM5100455-8hrs_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiens8hrs EdUWT///SAR-seq
GSM5100456-8hrs_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiens8hrs EdUWT///SAR-seq
GSM5100457-18hrs_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiens18hrs EdUWT///SAR-seq
GSM5100458-18hrs_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiens18hrs EdUWT///SAR-seq
GSM5100459-MMS_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensMMSWT///SAR-seq
GSM5100460-MMS_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensMMSWT///SAR-seq
GSM5100461-NT_for_MMS_SAR-seq_in_iNeuron_rep1iNeuronHomo sapiensNTWT///SAR-seq
GSM5100462-NT_for_MMS_SAR-seq_in_iNeuron_rep2iNeuronHomo sapiensNTWT///SAR-seq
GSM5100463-AsisIplusDOX_SAR-seq_in_preBAbel pre-B cellMus musculusDoxycyclineWT//AsiSISAR-seq
GSM5100464-AsisIminusDOX_SAR-seq_in_preBAbel pre-B cellMus musculusNTWT//AsiSISAR-seq
GSM5100465-SAR-seq_in_rat_primary_neuronRat cortical neuronsRattus norvegicusAphidicolinWT///SAR-seq
GSM5100466-input_for_SAR-seq_in_primary_neuronRat cortical neuronsRattus norvegicusNTWT///SAR-seq


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