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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE139011
PMID:
31862872
Technique Type:
SSiNGLe
Publication:
Novel approach reveals genomic landscapes of single-strand DNA breaks with nucleotide resolution in human cells
First Author:
Huifen Cao
Last Author:
Philipp Kapranov
Year:
2019
Journal:
Nature Communications
Access Link:
Samples ( 109 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM4126100-K562_treated_with_10074-G5_for_12_hours_bioreplica_1 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126101-K562_treated_with_10074-G5_for_12_hours_bioreplica_2 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126102-K562_treated_with_10074-G5_for_24_hours_bioreplica_1 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126103-K562_treated_with_10074-G5_for_24_hours_bioreplica_2 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126104-K562_treated_with_10074-G5_for_36_hours_bioreplica_1 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126105-K562_treated_with_10074-G5_for_36_hours_bioreplica_2 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126106-K562_treated_with_10074-G5_for_48_hours_bioreplica_1 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126107-K562_treated_with_10074-G5_for_48_hours_bioreplica_2 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126108-K562_treated_with_10074-G5_for_6_hours_bioreplica_1 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126109-K562_treated_with_10074-G5_for_6_hours_bioreplica_2 | K562 | Homo sapiens | 10074-G5 (c-Myc inhibitor) | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126110-K562_treated_with_DMSO_for_12_hours_bioreplica_1 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126111-K562_treated_with_DMSO_for_12_hours_bioreplica_2 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126112-K562_treated_with_DMSO_for_12_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM4126113-K562_treated_with_DMSO_for_24_hours_bioreplica_1 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126114-K562_treated_with_DMSO_for_24_hours_bioreplica_2 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126115-K562_treated_with_DMSO_for_24_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM4126116-K562_treated_with_DMSO_for_36_hours_bioreplica_1 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126117-K562_treated_with_DMSO_for_36_hours_bioreplica_2 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126118-K562_treated_with_DMSO_for_36_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM4126119-K562_treated_with_DMSO_for_48_hours_bioreplica_1 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126120-K562_treated_with_DMSO_for_48_hours_bioreplica_2 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126121-K562_treated_with_DMSO_for_48_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM4126122-K562_treated_with_DMSO_for_6_hours_bioreplica_1 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126123-K562_treated_with_DMSO_for_6_hours_bioreplica_2 | K562 | Homo sapiens | DMSO | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126124-K562_treated_with_DMSO_for_6_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM4126125-K562_treated_with_Etoposide_for_12_hours_bioreplica_1 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126126-K562_treated_with_Etoposide_for_12_hours_bioreplica_2 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126127-K562_treated_with_Etoposide_for_12_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Etoposide | / | / | / | / | SSiNGLe | |
| GSM4126128-K562_treated_with_Etoposide_for_24_hours_bioreplica_1 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126129-K562_treated_with_Etoposide_for_24_hours_bioreplica_2 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126130-K562_treated_with_Etoposide_for_24_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Etoposide | / | / | / | / | SSiNGLe | |
| GSM4126131-K562_treated_with_Etoposide_for_36_hours_bioreplica_1 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126132-K562_treated_with_Etoposide_for_36_hours_bioreplica_2 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126133-K562_treated_with_Etoposide_for_36_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Etoposide | / | / | / | / | SSiNGLe | |
| GSM4126134-K562_treated_with_Etoposide_for_48_hours_bioreplica_1 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126135-K562_treated_with_Etoposide_for_48_hours_bioreplica_2 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126136-K562_treated_with_Etoposide_for_48_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Etoposide | / | / | / | / | SSiNGLe | |
| GSM4126137-K562_treated_with_Etoposide_for_6_hours_bioreplica_1 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126138-K562_treated_with_Etoposide_for_6_hours_bioreplica_2 | K562 | Homo sapiens | Etoposide | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126139-K562_treated_with_Etoposide_for_6_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Etoposide | / | / | / | / | SSiNGLe | |
| GSM4126140-K562_treated_with_Imatinib_for_12_hours_bioreplica_1 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126141-K562_treated_with_Imatinib_for_12_hours_bioreplica_2 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126142-K562_treated_with_Imatinib_for_24_hours_bioreplica_1 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126143-K562_treated_with_Imatinib_for_24_hours_bioreplica_2 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126144-K562_treated_with_Imatinib_for_36_hours_bioreplica_1 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126145-K562_treated_with_Imatinib_for_36_hours_bioreplica_2 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126146-K562_treated_with_Imatinib_for_48_hours_bioreplica_1 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126147-K562_treated_with_Imatinib_for_48_hours_bioreplica_2 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126148-K562_treated_with_Imatinib_for_6_hours_bioreplica_1 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126149-K562_treated_with_Imatinib_for_6_hours_bioreplica_2 | K562 | Homo sapiens | Imatinib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126150-K562_treated_with_Romidespin_for_12_hours_bioreplica_1 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126151-K562_treated_with_Romidespin_for_12_hours_bioreplica_2 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126152-K562_treated_with_Romidespin_for_12_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Romidepsin | / | / | / | / | SSiNGLe | |
| GSM4126153-K562_treated_with_Romidespin_for_24_hours_bioreplica_1 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126154-K562_treated_with_Romidespin_for_24_hours_bioreplica_2 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126155-K562_treated_with_Romidespin_for_24_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Romidepsin | / | / | / | / | SSiNGLe | |
| GSM4126156-K562_treated_with_Romidespin_for_36_hours_bioreplica_1 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126157-K562_treated_with_Romidespin_for_36_hours_bioreplica_2 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126158-K562_treated_with_Romidespin_for_36_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Romidepsin | / | / | / | / | SSiNGLe | |
| GSM4126159-K562_treated_with_Romidespin_for_48_hours_bioreplica_1 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126160-K562_treated_with_Romidespin_for_48_hours_bioreplica_2 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126161-K562_treated_with_Romidespin_for_48_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Romidepsin | / | / | / | / | SSiNGLe | |
| GSM4126162-K562_treated_with_Romidespin_for_6_hours_bioreplica_1 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126163-K562_treated_with_Romidespin_for_6_hours_bioreplica_2 | K562 | Homo sapiens | Romidepsin | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126164-K562_treated_with_Romidespin_for_6_hours_without_formaldehyde_crosslinking | K562 | Homo sapiens | Romidepsin | / | / | / | / | SSiNGLe | |
| GSM4126165-K562_treated_with_SN-38_for_12_hours_bioreplica_1 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126166-K562_treated_with_SN-38_for_12_hours_bioreplica_2 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126167-K562_treated_with_SN-38_for_24_hours_bioreplica_1 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126168-K562_treated_with_SN-38_for_24_hours_bioreplica_2 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126169-K562_treated_with_SN-38_for_36_hours_bioreplica_1 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126170-K562_treated_with_SN-38_for_36_hours_bioreplica_2 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126171-K562_treated_with_SN-38_for_48_hours_bioreplica_1 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126172-K562_treated_with_SN-38_for_48_hours_bioreplica_2 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126173-K562_treated_with_SN-38_for_6_hours_bioreplica_1 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126174-K562_treated_with_SN-38_for_6_hours_bioreplica_2 | K562 | Homo sapiens | SN-38 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126175-K562_treated_with_Talazoparib_for_12_hours_bioreplica_1 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126176-K562_treated_with_Talazoparib_for_12_hours_bioreplica_2 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126177-K562_treated_with_Talazoparib_for_24_hours_bioreplica_1 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126178-K562_treated_with_Talazoparib_for_24_hours_bioreplica_2 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126179-K562_treated_with_Talazoparib_for_36_hours_bioreplica_1 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126180-K562_treated_with_Talazoparib_for_36_hours_bioreplica_2 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126181-K562_treated_with_Talazoparib_for_48_hours_bioreplica_1 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126182-K562_treated_with_Talazoparib_for_48_hours_bioreplica_2 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126183-K562_treated_with_Talazoparib_for_6_hours_bioreplica_1 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126184-K562_treated_with_Talazoparib_for_6_hours_bioreplica_2 | K562 | Homo sapiens | Talazoparib | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126185-K562_treated_with_YM-155_for_12_hours_bioreplica_1 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126186-K562_treated_with_YM-155_for_12_hours_bioreplica_2 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126187-K562_treated_with_YM-155_for_24_hours_bioreplica_1 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126188-K562_treated_with_YM-155_for_24_hours_bioreplica_2 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126189-K562_treated_with_YM-155_for_36_hours_bioreplica_1 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126190-K562_treated_with_YM-155_for_36_hours_bioreplica_2 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126191-K562_treated_with_YM-155_for_48_hours_bioreplica_1 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126192-K562_treated_with_YM-155_for_48_hours_bioreplica_2 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126193-K562_treated_with_YM-155_for_6_hours_bioreplica_1 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126194-K562_treated_with_YM-155_for_6_hours_bioreplica_2 | K562 | Homo sapiens | YM-155 | / | cells are crosslinked in situ with formaldehyde | / | / | SSiNGLe | |
| GSM4126195-Genomic_DNA_digested_with_AsiSI_after_Mnase_fragmentation_and_purification_B1 | K562 | Homo sapiens | / | / | / | / | AsiSI | SSiNGLe | |
| GSM4126196-Genomic_DNA_digested_with_AsiSI_after_Mnase_fragmentation_and_purification_B2 | K562 | Homo sapiens | / | / | / | / | AsiSI | SSiNGLe | |
| GSM4126197-Nuclei_from_H2O2-treated_cells_digested_with_Nt.BbvCI_bioreplica_1 | K562 | Homo sapiens | H2O2 | / | / | / | Nt.BbvCI | SSiNGLe | |
| GSM4126198-Nuclei_from_H2O2-treated_cells_digested_with_Nt.BbvCI_bioreplica_2 | K562 | Homo sapiens | H2O2 | / | / | / | Nt.BbvCI | SSiNGLe | |
| GSM4126199-Nuclei_from_H2O2-treated_cells_digested_with_Nt.BbvCI_bioreplica_3 | K562 | Homo sapiens | H2O2 | / | / | / | Nt.BbvCI | SSiNGLe | |
| GSM4126200-Nuclei_from_H2O2-treated_cells_digested_with_Nt.BbvCI_and_then_treated_with_SAP_bioreplica_1 | K562 | Homo sapiens | H2O2 | / | / | / | Nt.BbvCI | SSiNGLe | |
| GSM4126201-Nuclei_from_H2O2-treated_cells_digested_with_Nt.BbvCI_and_then_treated_with_SAP_bioreplica_2 | K562 | Homo sapiens | H2O2 | / | / | / | Nt.BbvCI | SSiNGLe | |
| GSM4126202-Nuclei_from_H2O2-treated_cells_digested_with_Nt.BbvCI_and_then_treated_with_SAP_bioreplica_3 | K562 | Homo sapiens | H2O2 | / | / | / | Nt.BbvCI | SSiNGLe | |
| GSM4126203-HeLa_bioreplica_1 | HeLa | Homo sapiens | / | / | / | / | / | SSiNGLe | |
| GSM4126204-HeLa_bioreplica_2 | HeLa | Homo sapiens | / | / | / | / | / | SSiNGLe | |
| GSM4126205-HeLa_bioreplica_3 | HeLa | Homo sapiens | / | / | / | / | / | SSiNGLe | |
| GSM4126206-Neuro2A_bioreplica_1 | Neuro2A | Mus musculus | / | / | / | / | / | SSiNGLe | |
| GSM4126207-Neuro2A_bioreplica_2 | Neuro2A | Mus musculus | / | / | / | / | / | SSiNGLe | |
| GSM4126208-Neuro2A_bioreplica_3 | Neuro2A | Mus musculus | / | / | / | / | / | SSiNGLe |
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