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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE138915
PMID:
32051414
Technique Type:
ChIPseq + END-seq
Publication:
ATM and PRDM9 regulate SPO11-bound recombination intermediates during meiosis
First Author:
Jacob Paiano
Last Author:
André Nussenzweig
Year:
2020
Journal:
Nature Communications
Access Link:
Samples ( 30 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM4122777-WT_END-seq_with_20_mice_rep1 | Testis (20 mice) | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| GSM4122778-WT_END-seq_with_20_mice_rep2 | Testis (20 mice) | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| GSM4122779-WT_END-seq_with_1_mouse | Testis (1 mouse) | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| GSM4122780-WT_END-seq_with_ExoT_only | Testis | Mus musculus | / | WT | Exo T | / | / | END-seq | |
| GSM4122781-WT_END-seq_with_MRN--CtIP--Mn | Testis | Mus musculus | / | WT | Exo T + MRN + CtIP + MnCl2 | / | / | END-seq | |
| GSM4122783-WT_END-seq_with_ExoT--TDP2 | Testis | Mus musculus | / | WT | Exo VII + Exo T + TDP2 | / | / | END-seq | |
| GSM4122784-ATM-KO_END-seq | Testis | Mus musculus | / | ATM-/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4122785-ATM-KO_END-seq_with_ExoT_only | Testis | Mus musculus | / | ATM-/- | Exo T | / | / | END-seq | |
| GSM4122786-ATM-KO_END-seq_with_ExoT--TDP2 | Testis | Mus musculus | / | ATM-/- | ExoT + TDP2 | / | / | END-seq | |
| GSM4122787-EXO1-KO_END-seq | Testis | Mus musculus | / | EXO1-/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4122788-WT_for_EXO1-KO_END-seq | Testis | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| GSM4122789-53BP1-KO_END-seq | Testis | Mus musculus | / | 53BP1-/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4122790-BRCA1del11_53BP1-KO_END-seq | Testis | Mus musculus | / | BRCA1Δ11 53BP1-/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4122791-BRCA1del11_53BP1_S25A_END-seq | Testis | Mus musculus | / | BRCA1Δ11 53BP1S25A | Exo VII + Exo T | / | / | END-seq | |
| GSM4122792-WT_for_BRCA1del11_53BP1_S25A_END-seq | Testis | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| GSM4122793-BRCA1del11_p53-HET_END-seq | Testis | Mus musculus | / | BRCA1Δ11 p53+/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4122794-p53-HET_END-seq | Testis | Mus musculus | / | p53+/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4122795-DMC1-KO_END-seq | Testis | Mus musculus | / | DMC1-/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4122796-B6xCAST_hybrid_END-seq_rep1 | Testis | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| GSM4122797-B6xCAST_hybrid_END-seq_rep2 | Testis | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| GSM4122798-PRDM9-KO_END-seq | Testis | Mus musculus | / | PRDM9-/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4122799-WT_for_PRDM9-KO_END-seq | Testis | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| GSM4122800-CAST_END-seq | Testis | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| GSM4280502-WT_END-seq_with_MRN--CtIP-Mn | Testis | Mus musculus | / | WT | Exo VII + Exo T + MRN + CtIP | / | / | END-seq | |
| GSM4280503-WT_END-seq_with_MRN--Mn | Testis | Mus musculus | / | WT | Exo VII + Exo T + MRN + MnCl2 | / | / | END-seq | |
| GSM4280504-ATM-KO_END-seq_with_ExoT--TDP2_rep2 | Testis | Mus musculus | / | WT | ExoT + TDP2 | / | / | END-seq | |
| GSM4280505-Hop2-KO_END-seq | Testis | Mus musculus | / | Hop2-/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4280506-PRDM9-KO_END-seq_rep2 | Testis | Mus musculus | / | Prdm9-/- | Exo VII + Exo T | / | / | END-seq | |
| GSM4122803-WT_MRE11_ChIP-seq | Testis | Mus musculus | NA | WT | NA | / | / | ChIP-seq (anti-MRE11) | |
| GSM4122804-ATM-KO_MRE11_ChIP-seq | Testis | Mus musculus | NA | ATM-/- | NA | / | / | ChIP-seq (anti-MRE11) |
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