DNA Damage Atlas





Basic Information

Dataset ID:

  GSE213149


PMID:

  36153319


Technique Type:

  PEM-seq


Publication:

  Comprehensive assessment of miniature CRISPR-Cas12f nucleases for gene disruption


First Author:

  Changchang Xin


Last Author:

  Jiazhi Hu


Year:

  2022


Journal:

  Nature Communications


Access Link:   


Samples ( 120 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM6573498-PEM-seq_HEK293T_LbCas12a_VEGFA-1293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//VEGFA-1 locusPEM-seq
GSM6573499-PEM-seq_HEK293T_SpCas9_VEGFA-1293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//VEGFA-1 locusPEM-seq
GSM6573500-PEM-seq_HEK293T_CasMINI_VEGFA-1293THomo sapienstransfected with gRNA-CasMINI plasmidWT//VEGFA-1 locusPEM-seq
GSM6573501-PEM-seq_HEK293T_AsCas12a_VEGFA-1293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//VEGFA-1 locusPEM-seq
GSM6573502-PEM-seq_HEK293T_CasMINI-ge4.1_VEGFA-1293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//VEGFA-1 locusPEM-seq
GSM6573503-PEM-seq_HEK293T_AsCas12f1_VEGFA-1293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//VEGFA-1 locusPEM-seq
GSM6573504-PEM-seq_HEK293T_Un1Cas12f1_VEGFA-1293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//VEGFA-1 locusPEM-seq
GSM6573505-PEM-seq_HEK293T_PlmCas12e_VEGFA-1293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//VEGFA-1 locusPEM-seq
GSM6573506-PEM-seq_HEK293T_control_VEGFA-1293THomo sapiens/WT///PEM-seq
GSM6573507-PEM-seq_HEK293T_PlmCas12e-R1-v2_VEGFA-1293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//VEGFA-1 locusPEM-seq
GSM6573508-PEM-seq_HEK293T_LbCas12a_VEGFA-2293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//VEGFA-2 locusPEM-seq
GSM6573509-PEM-seq_HEK293T_SpCas9_VEGFA-2293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//VEGFA-2 locusPEM-seq
GSM6573510-PEM-seq_HEK293T_CasMINI_VEGFA-2293THomo sapienstransfected with gRNA-CasMINI plasmidWT//VEGFA-2 locusPEM-seq
GSM6573511-PEM-seq_HEK293T_AsCas12a_VEGFA-2293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//VEGFA-2 locusPEM-seq
GSM6573512-PEM-seq_HEK293T_CasMINI-ge4.1_VEGFA-2293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//VEGFA-2 locusPEM-seq
GSM6573513-PEM-seq_HEK293T_AsCas12f1_VEGFA-2293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//VEGFA-2 locusPEM-seq
GSM6573514-PEM-seq_HEK293T_Un1Cas12f1_VEGFA-2293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//VEGFA-2 locusPEM-seq
GSM6573515-PEM-seq_HEK293T_PlmCas12e_VEGFA-2293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//VEGFA-2 locusPEM-seq
GSM6573516-PEM-seq_HEK293T_control_VEGFA-2293THomo sapiens/WT///PEM-seq
GSM6573517-PEM-seq_HEK293T_PlmCas12e-R1-v2_VEGFA-2293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//VEGFA-2 locusPEM-seq
GSM6573518-PEM-seq_HEK293T_LbCas12a_COL8A1293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//COL8A1 locusPEM-seq
GSM6573519-PEM-seq_HEK293T_SpCas9_COL8A1293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//COL8A1 locusPEM-seq
GSM6573520-PEM-seq_HEK293T_CasMINI_COL8A1293THomo sapienstransfected with gRNA-CasMINI plasmidWT//COL8A1 locusPEM-seq
GSM6573521-PEM-seq_HEK293T_AsCas12a_COL8A1293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//COL8A1 locusPEM-seq
GSM6573522-PEM-seq_HEK293T_CasMINI-ge4.1_COL8A1293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//COL8A1 locusPEM-seq
GSM6573523-PEM-seq_HEK293T_AsCas12f1_COL8A1293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//COL8A1 locusPEM-seq
GSM6573524-PEM-seq_HEK293T_Un1Cas12f1_COL8A1293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//COL8A1 locusPEM-seq
GSM6573525-PEM-seq_HEK293T_PlmCas12e_COL8A1293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//COL8A1 locusPEM-seq
GSM6573526-PEM-seq_HEK293T_control_COL8A1293THomo sapiens/WT///PEM-seq
GSM6573527-PEM-seq_HEK293T_PlmCas12e-R1-v2_COL8A1293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//COL8A1 locusPEM-seq
GSM6573528-PEM-seq_HEK293T_LbCas12a_NLRC4293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//NLRC4 locusPEM-seq
GSM6573529-PEM-seq_HEK293T_SpCas9_NLRC4293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//NLRC4 locusPEM-seq
GSM6573530-PEM-seq_HEK293T_CasMINI_NLRC4293THomo sapienstransfected with gRNA-CasMINI plasmidWT//NLRC4 locusPEM-seq
GSM6573531-PEM-seq_HEK293T_AsCas12a_NLRC4293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//NLRC4 locusPEM-seq
GSM6573532-PEM-seq_HEK293T_CasMINI-ge4.1_NLRC4293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//NLRC4 locusPEM-seq
GSM6573533-PEM-seq_HEK293T_AsCas12f1_NLRC4293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//NLRC4 locusPEM-seq
GSM6573534-PEM-seq_HEK293T_Un1Cas12f1_NLRC4293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//NLRC4 locusPEM-seq
GSM6573535-PEM-seq_HEK293T_PlmCas12e_NLRC4293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//NLRC4 locusPEM-seq
GSM6573536-PEM-seq_HEK293T_control_NLRC4293THomo sapiens/WT///PEM-seq
GSM6573537-PEM-seq_HEK293T_PlmCas12e-R1-v2_NLRC4293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//NLRC4 locusPEM-seq
GSM6573538-PEM-seq_HEK293T_LbCas12a_NUDT16293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//NUDT16 locusPEM-seq
GSM6573539-PEM-seq_HEK293T_SpCas9_NUDT16293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//NUDT16 locusPEM-seq
GSM6573540-PEM-seq_HEK293T_CasMINI_NUDT16293THomo sapienstransfected with gRNA-CasMINI plasmidWT//NUDT16 locusPEM-seq
GSM6573541-PEM-seq_HEK293T_AsCas12a_NUDT16293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//NUDT16 locusPEM-seq
GSM6573542-PEM-seq_HEK293T_CasMINI-ge4.1_NUDT16293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//NUDT16 locusPEM-seq
GSM6573543-PEM-seq_HEK293T_AsCas12f1_NUDT16293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//NUDT16 locusPEM-seq
GSM6573544-PEM-seq_HEK293T_Un1Cas12f1_NUDT16293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//NUDT16 locusPEM-seq
GSM6573545-PEM-seq_HEK293T_PlmCas12e_NUDT16293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//NUDT16 locusPEM-seq
GSM6573546-PEM-seq_HEK293T_control_NUDT16293THomo sapiens/WT///PEM-seq
GSM6573547-PEM-seq_HEK293T_PlmCas12e-R1-v2_NUDT16293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//NUDT16 locusPEM-seq
GSM6573548-PEM-seq_HEK293T_LbCas12a_HBB293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//HBB locusPEM-seq
GSM6573549-PEM-seq_HEK293T_SpCas9_HBB293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//HBB locusPEM-seq
GSM6573550-PEM-seq_HEK293T_CasMINI_HBB293THomo sapienstransfected with gRNA-CasMINI plasmidWT//HBB locusPEM-seq
GSM6573551-PEM-seq_HEK293T_AsCas12a_HBB293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//HBB locusPEM-seq
GSM6573552-PEM-seq_HEK293T_CasMINI-ge4.1_HBB293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//HBB locusPEM-seq
GSM6573553-PEM-seq_HEK293T_AsCas12f1_HBB293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//HBB locusPEM-seq
GSM6573554-PEM-seq_HEK293T_Un1Cas12f1_HBB293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//HBB locusPEM-seq
GSM6573555-PEM-seq_HEK293T_PlmCas12e_HBB293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//HBB locusPEM-seq
GSM6573556-PEM-seq_HEK293T_control_HBB293THomo sapiens/WT///PEM-seq
GSM6573557-PEM-seq_HEK293T_PlmCas12e-R1-v2_HBB293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//HBB locusPEM-seq
GSM6573558-PEM-seq_HEK293T_LbCas12a_INFg293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//INFg locusPEM-seq
GSM6573559-PEM-seq_HEK293T_SpCas9_INFg293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//INFg locusPEM-seq
GSM6573560-PEM-seq_HEK293T_CasMINI_INFg293THomo sapienstransfected with gRNA-CasMINI plasmidWT//INFg locusPEM-seq
GSM6573561-PEM-seq_HEK293T_AsCas12a_INFg293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//INFg locusPEM-seq
GSM6573562-PEM-seq_HEK293T_CasMINI-ge4.1_INFg293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//INFg locusPEM-seq
GSM6573563-PEM-seq_HEK293T_AsCas12f1_INFg293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//INFg locusPEM-seq
GSM6573564-PEM-seq_HEK293T_Un1Cas12f1_INFg293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//INFg locusPEM-seq
GSM6573565-PEM-seq_HEK293T_PlmCas12e_INFg293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//INFg locusPEM-seq
GSM6573566-PEM-seq_HEK293T_control_INFg293THomo sapiens/WT///PEM-seq
GSM6573567-PEM-seq_HEK293T_PlmCas12e-R1-v2_INFg293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//INFg locusPEM-seq
GSM6573568-PEM-seq_HEK293T_LbCas12a_CLIC4293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//CLIC4 locusPEM-seq
GSM6573569-PEM-seq_HEK293T_SpCas9_CLIC4293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//CLIC4 locusPEM-seq
GSM6573570-PEM-seq_HEK293T_CasMINI_CLIC4293THomo sapienstransfected with gRNA-CasMINI plasmidWT//CLIC4 locusPEM-seq
GSM6573571-PEM-seq_HEK293T_AsCas12a_CLIC4293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//CLIC4 locusPEM-seq
GSM6573572-PEM-seq_HEK293T_CasMINI-ge4.1_CLIC4293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//CLIC4 locusPEM-seq
GSM6573573-PEM-seq_HEK293T_AsCas12f1_CLIC4293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//CLIC4 locusPEM-seq
GSM6573574-PEM-seq_HEK293T_Un1Cas12f1_CLIC4293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//CLIC4 locusPEM-seq
GSM6573575-PEM-seq_HEK293T_PlmCas12e_CLIC4293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//CLIC4 locusPEM-seq
GSM6573576-PEM-seq_HEK293T_control_CLIC4293THomo sapiens/WT///PEM-seq
GSM6573577-PEM-seq_HEK293T_PlmCas12e-R1-v2_CLIC4293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//CLIC4 locusPEM-seq
GSM6573578-PEM-seq_HEK293T_LbCas12a_LNX1293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//LNX1 locusPEM-seq
GSM6573579-PEM-seq_HEK293T_SpCas9_LNX1293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//LNX1 locusPEM-seq
GSM6573580-PEM-seq_HEK293T_CasMINI_LNX1293THomo sapienstransfected with gRNA-CasMINI plasmidWT//LNX1 locusPEM-seq
GSM6573581-PEM-seq_HEK293T_AsCas12a_LNX1293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//LNX1 locusPEM-seq
GSM6573582-PEM-seq_HEK293T_CasMINI-ge4.1_LNX1293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//LNX1 locusPEM-seq
GSM6573583-PEM-seq_HEK293T_AsCas12f1_LNX1293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//LNX1 locusPEM-seq
GSM6573584-PEM-seq_HEK293T_Un1Cas12f1_LNX1293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//LNX1 locusPEM-seq
GSM6573585-PEM-seq_HEK293T_PlmCas12e_LNX1293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//LNX1 locusPEM-seq
GSM6573586-PEM-seq_HEK293T_control_LNX1293THomo sapiens/WT///PEM-seq
GSM6573587-PEM-seq_HEK293T_PlmCas12e-R1-v2_LNX1293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//LNX1 locusPEM-seq
GSM6573588-PEM-seq_HEK293T_LbCas12a_FGF18293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//FGF18 locusPEM-seq
GSM6573589-PEM-seq_HEK293T_SpCas9_FGF18293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//FGF18 locusPEM-seq
GSM6573590-PEM-seq_HEK293T_CasMINI_FGF18293THomo sapienstransfected with gRNA-CasMINI plasmidWT//FGF18 locusPEM-seq
GSM6573591-PEM-seq_HEK293T_AsCas12a_FGF18293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//FGF18 locusPEM-seq
GSM6573592-PEM-seq_HEK293T_CasMINI-ge4.1_FGF18293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//FGF18 locusPEM-seq
GSM6573593-PEM-seq_HEK293T_AsCas12f1_FGF18293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//FGF18 locusPEM-seq
GSM6573594-PEM-seq_HEK293T_Un1Cas12f1_FGF18293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//FGF18 locusPEM-seq
GSM6573595-PEM-seq_HEK293T_PlmCas12e_FGF18293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//FGF18 locusPEM-seq
GSM6573596-PEM-seq_HEK293T_control_FGF18293THomo sapiens/WT///PEM-seq
GSM6573597-PEM-seq_HEK293T_PlmCas12e-R1-v2_FGF18293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//FGF18 locusPEM-seq
GSM6573598-PEM-seq_HEK293T_LbCas12a_P2RX5-TAX1BP3293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//P2RX5-TAX1BP3 locusPEM-seq
GSM6573599-PEM-seq_HEK293T_SpCas9_P2RX5-TAX1BP3293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//P2RX5-TAX1BP3 locusPEM-seq
GSM6573600-PEM-seq_HEK293T_CasMINI_P2RX5-TAX1BP3293THomo sapienstransfected with gRNA-CasMINI plasmidWT//P2RX5-TAX1BP3 locusPEM-seq
GSM6573601-PEM-seq_HEK293T_AsCas12a_P2RX5-TAX1BP3293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//P2RX5-TAX1BP3 locusPEM-seq
GSM6573602-PEM-seq_HEK293T_CasMINI-ge4.1_P2RX5-TAX1BP3293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//P2RX5-TAX1BP3 locusPEM-seq
GSM6573603-PEM-seq_HEK293T_AsCas12f1_P2RX5-TAX1BP3293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//P2RX5-TAX1BP3 locusPEM-seq
GSM6573604-PEM-seq_HEK293T_Un1Cas12f1_P2RX5-TAX1BP3293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//P2RX5-TAX1BP3 locusPEM-seq
GSM6573605-PEM-seq_HEK293T_PlmCas12e_P2RX5-TAX1BP3293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//P2RX5-TAX1BP3 locusPEM-seq
GSM6573606-PEM-seq_HEK293T_control_P2RX5-TAX1BP3293THomo sapiens/WT///PEM-seq
GSM6573607-PEM-seq_HEK293T_PlmCas12e-R1-v2_P2RX5-TAX1BP3293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//P2RX5-TAX1BP3 locusPEM-seq
GSM6573608-PEM-seq_HEK293T_LbCas12a_KLHL29293THomo sapienstransfected with gRNA-LbCas12a plasmidWT//KLHL29 locusPEM-seq
GSM6573609-PEM-seq_HEK293T_SpCas9_KLHL29293THomo sapienstransfected with gRNA-SpCas9 plasmidWT//KLHL29 locusPEM-seq
GSM6573610-PEM-seq_HEK293T_CasMINI_KLHL29293THomo sapienstransfected with gRNA-CasMINI plasmidWT//KLHL29 locusPEM-seq
GSM6573611-PEM-seq_HEK293T_AsCas12a_KLHL29293THomo sapienstransfected with gRNA-AsCas12a plasmidWT//KLHL29 locusPEM-seq
GSM6573612-PEM-seq_HEK293T_CasMINI-ge4.1_KLHL29293THomo sapienstransfected with gRNA-CasMINI-ge4.1 plasmidWT//KLHL29 locusPEM-seq
GSM6573613-PEM-seq_HEK293T_AsCas12f1_KLHL29293THomo sapienstransfected with gRNA-AsCas12f1 plasmidWT//KLHL29 locusPEM-seq
GSM6573614-PEM-seq_HEK293T_Un1Cas12f1_KLHL29293THomo sapienstransfected with gRNA-Un1Cas12f1 plasmidWT//KLHL29 locusPEM-seq
GSM6573615-PEM-seq_HEK293T_PlmCas12e_KLHL29293THomo sapienstransfected with gRNA-PlmCas12e plasmidWT//KLHL29 locusPEM-seq
GSM6573616-PEM-seq_HEK293T_control_KLHL29293THomo sapiens/WT///PEM-seq
GSM6573617-PEM-seq_HEK293T_PlmCas12e-R1-v2_KLHL29293THomo sapienstransfected with gRNA-PlmCas12e-R1-v2 plasmidWT//KLHL29 locusPEM-seq


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