DNA Damage Atlas



Basic Information

Dataset ID:

  GSE203632


PMID:

  36075220


Technique Type:

  END-seq


Publication:

  S1-END-seq reveals DNA secondary structures in human cells


First Author:

  Gabriel Matos-Rodrigues


Last Author:

  André Nussenzweig


Year:

  2022


Journal:

  Molecular Cell


Access Link:   

Samples ( 53 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM6180987-S1_END_seq_KM12_replicate1KM12Homo sapiensNTDox inducible shWRNExo VII + Exo T + S1//END-seq
GSM6180988-S1_END_seq_SW48_replicate1SW48Homo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6180989-S1_END_seq_RKO_replicate1RKOHomo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6180990-S1_END_seq_SW620_replicate1SW620Homo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6180991-S1_END_seq_SW837_replicate1SW837Homo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6180992-S1_END_seq_SW48_replicate2SW48Homo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6180993-S1_END_seq_RKO_replicate2RKOHomo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6180994-S1_END_seq_SW620_replicate2SW620Homo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6180995-S1_END_seq_SW837_replicate2SW837Homo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6180996-S1_END_seq_KM12_replicate2KM12Homo sapiensNTDox inducible shWRNExo VII + Exo T + S1//END-seq
GSM6180997-S1_END_seq_KM12_replicate3KM12Homo sapiensNTDox inducible shWRNExo VII + Exo T + S1//END-seq
GSM6180998-S1_END_seq_KM12_shWRN_NTKM12Homo sapiensNTDox inducible shWRNExo VII + Exo T + S1//END-seq
GSM6180999-S1_END_seq_KM12_shWRN_Dox48hKM12Homo sapiensDoxycyclineDox inducible shWRNExo VII + Exo T + S1//END-seq
GSM6181000-S1_END_seq_KM12_DMSOKM12Homo sapiensDMSODox inducible shWRNExo VII + Exo T + S1//END-seq
GSM6181001-S1_END_seq_KM12_G2arrestKM12Homo sapiensRO3306Dox inducible shWRNExo VII + Exo T + S1G2/END-seq
GSM6181002-S1_END_seq_KM12_APH600nMKM12Homo sapiensAphidicolinDox inducible shWRNExo VII + Exo T + S1//END-seq
GSM6181003-S1_END_seq_KM12_G1arrestKM12Homo sapiensPalbociclibDox inducible shWRNExo VII + Exo T + S1G1/END-seq
GSM6181004-S1_END_seq_GM15851_DMSOGM15851Homo sapiensDMSOWTExo VII + Exo T + S1//END-seq
GSM6181005-S1_END_seq_GM15851_PA1GM15851Homo sapienspolyamide PA1WTExo VII + Exo T + S1//END-seq
GSM6181006-S1_END_seq_GM15850_DMSO_replicate1GM15850Homo sapiensDMSOFriedrich's ataxia patient cellsExo VII + Exo T + S1//END-seq
GSM6181007-S1_END_seq_GM15850_PA1_replicate1GM15850Homo sapienspolyamide PA1Friedrich's ataxia patient cellsExo VII + Exo T + S1//END-seq
GSM6181008-S1_END_seq_GM15850_DMSO_replicate2GM15850Homo sapiensDMSOFriedrich's ataxia patient cellsExo VII + Exo T + S1//END-seq
GSM6181009-S1_END_seq_GM15850_PA1_replicate2GM15850Homo sapienspolyamide PA1Friedrich's ataxia patient cellsExo VII + Exo T + S1//END-seq
GSM6181010-S1_END_seq_GM15851_PairedwithP1_END_SeqGM15851Homo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6181011-P1_END_seq_GM15851GM15851Homo sapiensNTWTExo VII + Exo T + P1//END-seq
GSM6181012-S1_END_seq_iPSC_i3N_day5iPSCsHomo sapiens//Exo VII + Exo T + S1//END-seq
GSM6181013-S1_END_seq_iPSC_i3N_day3_replicate1iPSCsHomo sapiens//Exo VII + Exo T + S1//END-seq
GSM6181014-S1_END_seq_iPSC_i3N_day2_replicate1iPSCsHomo sapiens//Exo VII + Exo T + S1//END-seq
GSM6181015-S1_END_seq_iPSC_i3N_day1_replicate1iPSCsHomo sapiens//Exo VII + Exo T + S1//END-seq
GSM6181016-S1_END_seq_iPSC_replicate1iPSCsHomo sapiens//Exo VII + Exo T + S1//END-seq
GSM6181017-S1_END_seq_iPSC_i3N_day3_replicate2iPSCsHomo sapiens//Exo VII + Exo T + S1//END-seq
GSM6181018-S1_END_seq_iPSC_i3N_day2_replicate2iPSCsHomo sapiens//Exo VII + Exo T + S1//END-seq
GSM6181019-S1_END_seq_iPSC_i3N_day1_replicate2iPSCsHomo sapiens//Exo VII + Exo T + S1//END-seq
GSM6181020-S1_END_seq_iPSC_replicate2iPSCsHomo sapiens//Exo VII + Exo T + S1//END-seq
GSM6181021-END_Seq_KM12_shWRN_NTKM12Homo sapiensNTDoxycycline inducible shWRNExo VII + Exo T//END-seq
GSM6181022-END_Seq_KM12_shWRN_Dox48hKM12Homo sapiensDoxycyclineDoxycycline inducible shWRNExo VII + Exo T//END-seq
GSM6181023-END_seq_KM12_replicate1KM12Homo sapiensNTDoxycycline inducible shWRNExo VII + Exo T//END-seq
GSM6181024-END_seq_KM12_replicate2KM12Homo sapiensNTDoxycycline inducible shWRNExo VII + Exo T//END-seq
GSM6181025-S1_END_seq_GM15851_paired-endGM15851Homo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6195478-S1-END-seq_SW48_DMSOSW48Homo sapiensDMSOWTExo VII + Exo T + S1//END-seq
GSM6195479-S1-END-seq_SW48_G1arrestSW49Homo sapiensPalbociclibWTExo VII + Exo T + S1G1/END-seq
GSM6195480-S1-END-seq_MCF10A_DMSOMCF-10AHomo sapiensDMSOWTExo VII + Exo T + S1//END-seq
GSM6195481-S1-END-seq_MCF10A_G1arrestMCF-10AHomo sapiensPalbociclibWTExo VII + Exo T + S1G1/END-seq
GSM6195482-S1-END-seq_GM15850_DMSOGM15850Homo sapiensDMSOFriedrich's ataxia patient cellsExo VII + Exo T + S1//END-seq
GSM6195483-S1-END-seq_GM15850_G1arrestGM15850Homo sapiensPalbociclibFriedrich's ataxia patient cellsExo VII + Exo T + S1G1/END-seq
GSM6195484-S1-END-seq_PrimaryFibroblastsPrimary human skin fibroblastsHomo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6195485-S1-END-seq_HACATHACATHomo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6195486-S1-END-seq_NHEKNHEKHomo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6372152-S1_END_seq_KM12_Paired_with_P1-END-seqKM12Homo sapiensNTWTExo VII + Exo T + S1//END-seq
GSM6372153-P1_END_seq_KM12KM12Homo sapiensNTWTExo VII + Exo T + P1//END-seq
GSM6372154-S1_END_seq_KM12_DMSO_replicate2KM12Homo sapiensDMSOWTExo VII + Exo T + S1//END-seq
GSM6372155-S1_END_seq_KM12_APH600nM_replicate2KM12Homo sapiensAphidicolinWTExo VII + Exo T + S1//END-seq
GSM6372156-S1_END_seq_KM12_G2arrest_replicate2KM12Homo sapiensRO3306WTExo VII + Exo T + S1G2/END-seq


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