DNA Damage Atlas



Basic Information

Dataset ID:

  GSE190955


PMID:

  36198706


Technique Type:

  SSiNGLe-AP


Publication:

  Complex genomic patterns of abasic sites in mammalian DNA revealed by a high-resolution SSiNGLe-AP method


First Author:

  Ye Cai


Last Author:

  Philipp Kapranov


Year:

  2022


Journal:

  Nature Communications


Access Link:   

Samples ( 129 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM5736233-N-A-1K562Homo sapiens/////SSiNGLe-AP
GSM5736234-N-A-2K562Homo sapiens/////SSiNGLe-AP
GSM5736235-N-A-3K562Homo sapiens/////SSiNGLe-AP
GSM5736236-P-A-1K562Homo sapiens/////SSiNGLe-AP
GSM5736237-P-A-2K562Homo sapiens/////SSiNGLe-AP
GSM5736238-P-A-3K562Homo sapiens/////SSiNGLe-AP
GSM5736239-Unblocked_controlK562Homo sapiens/////SSiNGLe-AP
GSM5736240-3-B-1BrainMus musculus/////SSiNGLe-AP
GSM5736241-3-B-2BrainMus musculus/////SSiNGLe-AP
GSM5736242-3-B-3BrainMus musculus/////SSiNGLe-AP
GSM5736243-12-B-1BrainMus musculus/////SSiNGLe-AP
GSM5736244-12-B-2BrainMus musculus/////SSiNGLe-AP
GSM5736245-12-B-3BrainMus musculus/////SSiNGLe-AP
GSM5736246-19-B-1BrainMus musculus/////SSiNGLe-AP
GSM5736247-19-B-2BrainMus musculus/////SSiNGLe-AP
GSM5736248-19-B-3BrainMus musculus/////SSiNGLe-AP
GSM5736249-22-B-2BrainMus musculus/////SSiNGLe-AP
GSM5736250-22-B-3BrainMus musculus/////SSiNGLe-AP
GSM5736251-3-H-1HeartMus musculus/////SSiNGLe-AP
GSM5736252-3-H-2HeartMus musculus/////SSiNGLe-AP
GSM5736253-3-H-3HeartMus musculus/////SSiNGLe-AP
GSM5736254-12-H-1HeartMus musculus/////SSiNGLe-AP
GSM5736255-12-H-2HeartMus musculus/////SSiNGLe-AP
GSM5736256-12-H-3HeartMus musculus/////SSiNGLe-AP
GSM5736257-19-H-1HeartMus musculus/////SSiNGLe-AP
GSM5736258-19-H-2HeartMus musculus/////SSiNGLe-AP
GSM5736259-19-H-3HeartMus musculus/////SSiNGLe-AP
GSM5736260-22-H-1HeartMus musculus/////SSiNGLe-AP
GSM5736261-22-H-2HeartMus musculus/////SSiNGLe-AP
GSM5736262-22-H-3HeartMus musculus/////SSiNGLe-AP
GSM5736263-3-L-1LiverMus musculus/////SSiNGLe-AP
GSM5736264-3-L-2LiverMus musculus/////SSiNGLe-AP
GSM5736265-3-L-3LiverMus musculus/////SSiNGLe-AP
GSM5736266-12-L-1LiverMus musculus/////SSiNGLe-AP
GSM5736267-12-L-2LiverMus musculus/////SSiNGLe-AP
GSM5736268-12-L-3LiverMus musculus/////SSiNGLe-AP
GSM5736269-19-L-1LiverMus musculus/////SSiNGLe-AP
GSM5736270-19-L-2LiverMus musculus/////SSiNGLe-AP
GSM5736271-19-L-3LiverMus musculus/////SSiNGLe-AP
GSM5736272-22-L-1LiverMus musculus/////SSiNGLe-AP
GSM5736273-22-L-2LiverMus musculus/////SSiNGLe-AP
GSM5736274-22-L-3LiverMus musculus/////SSiNGLe-AP
GSM5736275-3-M-1Bone marrowMus musculus/////SSiNGLe-AP
GSM5736276-3-M-2Bone marrowMus musculus/////SSiNGLe-AP
GSM5736277-3-M-3Bone marrowMus musculus/////SSiNGLe-AP
GSM5736278-12-M-1Bone marrowMus musculus/////SSiNGLe-AP
GSM5736279-12-M-2Bone marrowMus musculus/////SSiNGLe-AP
GSM5736280-12-M-3Bone marrowMus musculus/////SSiNGLe-AP
GSM5736281-19-M-1Bone marrowMus musculus/////SSiNGLe-AP
GSM5736282-19-M-2Bone marrowMus musculus/////SSiNGLe-AP
GSM5736283-19-M-3Bone marrowMus musculus/////SSiNGLe-AP
GSM5736284-22-M-1Bone marrowMus musculus/////SSiNGLe-AP
GSM5736285-22-M-2Bone marrowMus musculus/////SSiNGLe-AP
GSM5736286-22-M-3Bone marrowMus musculus/////SSiNGLe-AP
GSM5736287-3-P-1PBMCMus musculus/////SSiNGLe-AP
GSM5736288-3-P-2PBMCMus musculus/////SSiNGLe-AP
GSM5736289-3-P-3PBMCMus musculus/////SSiNGLe-AP
GSM5736290-12-P-1PBMCMus musculus/////SSiNGLe-AP
GSM5736291-12-P-2PBMCMus musculus/////SSiNGLe-AP
GSM5736292-12-P-3PBMCMus musculus/////SSiNGLe-AP
GSM5736293-19-P-1PBMCMus musculus/////SSiNGLe-AP
GSM5736294-19-P-2PBMCMus musculus/////SSiNGLe-AP
GSM5736295-19-P-3PBMCMus musculus/////SSiNGLe-AP
GSM5736296-22-P-1PBMCMus musculus/////SSiNGLe-AP
GSM5736297-22-P-2PBMCMus musculus/////SSiNGLe-AP
GSM5736298-22-P-3PBMCMus musculus/////SSiNGLe-AP
GSM5736299-3-S-1SpermMus musculus/////SSiNGLe-AP
GSM5736300-3-S-2SpermMus musculus/////SSiNGLe-AP
GSM5736301-3-S-3SpermMus musculus/////SSiNGLe-AP
GSM5736302-12-S-1SpermMus musculus/////SSiNGLe-AP
GSM5736303-12-S-2SpermMus musculus/////SSiNGLe-AP
GSM5736304-12-S-3SpermMus musculus/////SSiNGLe-AP
GSM5736305-19-S-1SpermMus musculus/////SSiNGLe-AP
GSM5736306-19-S-2SpermMus musculus/////SSiNGLe-AP
GSM5736307-19-S-3SpermMus musculus/////SSiNGLe-AP
GSM5736308-22-S-1SpermMus musculus/////SSiNGLe-AP
GSM5736309-22-S-2SpermMus musculus/////SSiNGLe-AP
GSM5736310-22-S-3SpermMus musculus/////SSiNGLe-AP
GSM6293321-N-A-1_human_genomeK562Homo sapiens/////SSiNGLe-AP
GSM6293322-N-A-2_human_genomeK562Homo sapiens/////SSiNGLe-AP
GSM6293323-N-A-3_human_genomeK562Homo sapiens/////SSiNGLe-AP
GSM6293324-P-A-1_human_genomeK562Homo sapiens/////SSiNGLe-AP
GSM6293325-P-A-2_human_genomeK562Homo sapiens/////SSiNGLe-AP
GSM6293326-P-A-3_human_genomeK562Homo sapiens/////SSiNGLe-AP
GSM6293327-Hela_MMS_NT_rep1HeLaHomo sapiensNT////SSiNGLe-AP
GSM6293328-Hela_MMS_NT_rep2HeLaHomo sapiensNT////SSiNGLe-AP
GSM6293329-Hela_MMS_NT_rep3HeLaHomo sapiensNT////SSiNGLe-AP
GSM6293330-Hela_MMS_rep1HeLaHomo sapiensMMS////SSiNGLe-AP
GSM6293331-Hela_MMS_rep2HeLaHomo sapiensMMS////SSiNGLe-AP
GSM6293332-Hela_MMS_rep3HeLaHomo sapiensMMS////SSiNGLe-AP
GSM6293333-Hela_MX_NT_rep1HeLaHomo sapiensNT////SSiNGLe-AP
GSM6293334-Hela_MX_NT_rep2HeLaHomo sapiensNT////SSiNGLe-AP
GSM6293335-Hela_MX_NT_rep3HeLaHomo sapiensNT////SSiNGLe-AP
GSM6293336-Hela_MX_rep1HeLaHomo sapiensMX////SSiNGLe-AP
GSM6293337-Hela_MX_rep2HeLaHomo sapiensMX////SSiNGLe-AP
GSM6293338-Hela_MX_rep3HeLaHomo sapiensMX////SSiNGLe-AP
GSM6293339-K562_MMS_NT_rep1K562Homo sapiensNT////SSiNGLe-AP
GSM6293340-K562_MMS_NT_rep2K562Homo sapiensNT////SSiNGLe-AP
GSM6293341-K562_MMS_NT_rep3K562Homo sapiensNT////SSiNGLe-AP
GSM6293342-K562_MMS_rep1K562Homo sapiensMMS////SSiNGLe-AP
GSM6293343-K562_MMS_rep2K562Homo sapiensMMS////SSiNGLe-AP
GSM6293344-K562_MMS_rep3K562Homo sapiensMMS////SSiNGLe-AP
GSM6293345-E-19-H-2_rep1HeartMus musculustreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293346-E-19-H-2_rep2HeartMus musculustreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293347-E-19-L-2_rep1LiverMus musculustreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293348-E-19-L-2_rep2LiverMus musculustreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293349-E-3-H-3_rep1HeartMus musculustreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293350-E-3-H-3_rep2HeartMus musculustreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293351-E-3-L-3_rep1LiverMus musculustreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293352-E-3-L-3_rep2LiverMus musculustreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293353-E-K562-1K562Homo sapienstreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293354-E-K562-2K562Homo sapienstreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293355-E-K562-3K562Homo sapienstreated with Endo IV for AP site detection////SSiNGLe-AP
GSM6293356-19-H-2_rep1HeartMus musculus/////SSiNGLe-AP
GSM6293357-19-H-2_rep2HeartMus musculus/////SSiNGLe-AP
GSM6293358-19-L-2-rep1LiverMus musculus/////SSiNGLe-AP
GSM6293359-19-L-2_rep2LiverMus musculus/////SSiNGLe-AP
GSM6293360-3-H-3_rep1HeartMus musculus/////SSiNGLe-AP
GSM6293361-3-H-3_rep2HeartMus musculus/////SSiNGLe-AP
GSM6293362-3-L-3_rep1LiverMus musculus/////SSiNGLe-AP
GSM6293363-3-L-3_rep2LiverMus musculus/////SSiNGLe-AP
GSM6293364-19-H-2_rep1_UnblockHeartMus musculus/////SSiNGLe-AP
GSM6293365-19-H-2_rep2_UnblockHeartMus musculus/////SSiNGLe-AP
GSM6293366-19-L-2-rep1_UnblockLiverMus musculus/////SSiNGLe-AP
GSM6293367-19-L-2_rep2_UnblockLiverMus musculus/////SSiNGLe-AP
GSM6293368-3-H-3_rep1_UnblockHeartMus musculus/////SSiNGLe-AP
GSM6293369-3-H-3_rep2_UnblockHeartMus musculus/////SSiNGLe-AP
GSM6293370-3-L-3_rep1_UnblockLiverMus musculus/////SSiNGLe-AP
GSM6293371-3-L-3_rep2_UnblockLiverMus musculus/////SSiNGLe-AP


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